CBB752/CPSC452/CPSC752/MBB452/MBB752/MCDB452/MCDB752

http://www.gersteinlab.org/courses/452/

Outline of topics

Class: 1:00-2:15 pm on Monday and Wednesday, in 305 BASS

Sept

Genomics Section
06
DS & MG
 Genomics: Overview. The Diversity of Life (Life at 110 C, at pH 1, or in 5 M salt)
Bioinformatics Topics slides
11
DS
 Genomics: Overview of Proteins and Nucleic Acids
13
DS
 Genome Sequencing, Sequence Annotation
18
DS
 Functional Genomics I (array technologies and uses)
20
DS
 Functional Genomics II (proteomics)
25
DS
 Structural Genomics
27
DS
 Metabolomics
Oct
02
MS
 Functional Genomics III slides
04
MS
 Functional Genomics IV slides
09
MS
 Functional Genomics V slides
11
DS
 Genomics in the pharmaceutical industry (Gary O'Neill, Merck-Frosst)
16
DS
 Chemical Genomics / Phylogenomics (Patrick O'Donoghue, Yale University) slides
18
DS
 MIDTERM EXAM (covering lectures through October 16)
23 (CANCELLED)
DS
 Combinatorial Biology (Chris Noren, New England Biolabs)

Bioinformatics Section
25
MG
 Bioinformatics: Overview slides
30
MG
 Analysis of Sequences 1 slides
Nov
01
MG
 Analysis of Sequences 2a slides
06
MG
 Analysis of Sequences 2b
08
MG
 Sequence to Structure a slides
13
MG
 Sequence to Structure b
15
MG
 Structures I slides Structures II slides
27
MG
 Quiz 1: ~20 minutes, covering Oct 25th - Nov 13th lectures. Previous Years' quizzes
Structure Simulation a slides
29
MG
 Structure Simulation b
Dec
04
MG
 Database and Semantic Web (Kei Cheung, Yale University) slides
06
MG
 quiz 2: ~20 minutes, covering Nov 15th - Dec 4th lectures.
Summary slides
Supplemental material