Gerstein Group

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Alumni

       Lab ID

Lab Dates

Other Info. (Affil., funding, etc.)

Current Position

Institution

Past Laboratory Staff

Philip Cayting

papers PC

11/2005 – 12/31/09

Programmer Analyst

-- Stanford

 
Software Developer, Stanford University

David Koppstein

papers DK

9/2008 – ?

Staff

-- --

Mayur Pawashe

papers MP

2/1/2014 – 5/31/2014

Postgraduate Associate

-- Raytheon

Michael Wilson

papers MW

5/2004 – 3/2012

Database Administrator

-- Yale

 
Research Assoc.

Henry Zheng

papers HZ

5/23/2013 – ?

Postgraduate Associate

-- --

 
Researcher

Guoneng Zhong

papers GZ

5/2006 – ?

Systems Programmer

-- --

 

Past Research Scientists

Alexej Abyzov

papers AAN

4/2008 – 1/6/2014

faculty Mayo Clinic

 
Asst. Prof.

Suganthi Balasubramanian

papers SB

9/1999 – 04/2015

industry Regeneron Pharmaceuticals

Gang Fang

papers GF

9/11/2007 – 09/2014

faculty NYU Shanghai

 
Asst. Prof.

Ekta Khurana

papers EK

4/2008 – 9/2014

faculty Weill Cornell Medical College

 
Asst. Prof.

Anurag Sethi

papers ANS

8/1/2013 – ?

ars

postdoc --

Daifeng Wang

papers DW

01/16/2012 – 08/2016

ars

faculty SUNY-Stony Brook

 
Asst. Prof.

Koon-Kiu Yan

papers KKY

6/2/2008 – ?

ars

-- --

 

Past Postdoctoral Associates and Fellows

Roger Alexander

papers RA

9/24/2007 – 8/31/2013

-- Pacific Northwest Diabetes Research Institute

 
Independent Consultant/Researcher

Thayalini Arinaminpathy

papers YP

6/2005 – 9/30/2007

jt. w. D Engelman

industry Detica Consulting

 
Consultant

Nitin Bhardwaj

papers NB

11/19/2007 – 11/1/2011

industry BASF

 
Staff Scientist

Can (John) Bruce

papers CB

9/1/2005 – 6/30/2007

jt. with P Miller

-- Bioinformatics Res., Yale

 
Associate Director

Anne (Counterman) Burba

papers AC

8/2005 – 02/28/09

industry --

 
Science and Technical writer

Chao Cheng

papers CC

3/2008 – 2012

faculty Dartmouth

 
Asst. Prof.

Sambath Chung

papers SC

2002 – 2004

jt with M Snyder

industry Genelogic

 
Scientist, GeneLogic, Maryland

Wyatt Clark

papers WC

7/1/13 – 7/18/14

-- BioMarin Pharmaceutical Inc

Olof Emanuelsson

papers OE

9/2003 – 9/2005

faculty Royal Institute of Technology, Sweden

 
Asst. Prof.

Chern-Sing Goh

papers CG

10/2002 – 6/2006

-- Bioinformatics Consulting

 
Consulting

Lukas Habegger

papers LH

9/2007 – 2012

industry LRK Consulting

thesis defense

 
Consulting

Paul Harrison

papers PH

1999 – 2004

faculty Biology Dept., McGill U

 
Assoc. Prof.

Hedi Hegyi

papers HH

1998 – 2000

faculty CEITEC

 
Post-Doc, Columbia University; then Post-Doc, Institute of Enzymology, Hungary Research scienttist, Max Planck Institute

Jochen Junker

papers JJ

2000 – 2002

-- --

Alexander Karpikov

papers AK

11/2004 – 12/31/2007

faculty Yale

 
Assoc Research Scientist Pathology

John Karro

papers JK2

2003 – 2005

faculty CS Dept., Miami U.

 
Asst. Prof.

Philip Kim

papers PK

12/2004 – 11/30/2008

faculty CCBR, U of Toronto

 
Asst. Prof.

Robert Kitchen

papers RK

7/2011 – 7/2016

(jt. w. A. Nairn)

-- --

Yuval Kluger

papers YK

1999 – 2002

faculty Pathology Dept., Yale U.

 
Assoc. Prof.

Jan Korbel

papers JK

5/2005 – 12/31/2007

faculty EMBL

 
Group Leader

Ning Lan

papers NL

2000 – 2002

industry Incyte

 
Incyte inc. CA

Ian Laurenzi

papers IL

2002 – 2004

industry ExxonMobil

 
Scientist

Ursula Lehnert

papers UL

2002 – 2004

industry McKinsey Consulting

 
Mckinsey Consulting, Germany

Yang Liu

papers YL

2000 – 2003

industry Sigma Aldrich

 
Research Scientist

Zhi (John) Lu

papers ZL

7/21/2008 – 2/28/11

faculty Tsinghua University

 
Asst. Prof.

Long Lu

papers JL

9/2003 – 12/2006

faculty Cincinnati Children's Hospital

 
Asst. Prof.

Nicholas Luscombe

papers NML

2000 – 2004

faculty EBI (Cambridge)

 
Group Leader

Duncan Milburn

papers DM

2002 – 2005

industry UCB Pharmacy

Renqiang (Martin) Min

papers RM

1/18/2011 – 1/31/2012

Biomedical Informatics Research

industry NEC

 
Researcher

Alberto Paccanaro

papers AP

12/2003 – 12/2005

faculty CS Dept. Royal Holloway, U of London

 
Reader

Baikang Pei

papers BP

9/15/2010 – 5/1/2016

-- --

Jiang Qian

papers JQ

1999 – 2002

faculty Johns Hopkins

 
Assoc. Prof.

Rajkumar (Raj) Sasidharan

papers RS

9/2004 – 10/31/2008

postdoc The Arabidopsis Information Resource, Carnegie Institute for Science, Department of Plant Biology

 
Scientific Curator

Andrea Sboner

papers ASB

3/2006 – 8/31/2011

faculty Cornell Medical School

 
Asst. Prof.

Cristina Sisu

papers CSDS

2/2011 – 3/2017

faculty Brunel University London

 
Asst. Prof.

Valery Trifonov

papers VT

1998 – 2004

industry Goldman Sachs

 
Software Developer

Yu (Brandon) Xia

papers YX

2/2003 – 9/2006

faculty Chemistry Dept., Boston U

 
Asst. Prof.

Yongpan (Daniel) Yan

papers YY

3/2005 – 8/2006

industry Glaxosmithkline

 
Principal Scientist

Zhiyun (Eric) Yu

papers ZY

2003 – 2006

industry McKinsey & Company Consulting

 
Consultant

Zhengdong Zhang

papers ZDZ

3/2005 – 12/1/2010

NIH-CDA (K99)

faculty Albert Einstein College of Medicine

 
Asst. Prof.

Yan Zhang

papers YZ

10/2012 – 1/2016

faculty Ohio State University

 
Asst. Prof.

Zhaolei Zhang

papers ZZ

2002 – 2004

faculty CCBR, U of Toronto

 
Asst. Prof.

Deyou Zheng

papers DZ

10/2003 – 8/31/2007

faculty Albert Einstein College of Medicine

 
Asst. Prof.
 

Past Graduate Students

Vadim Alexandrov

papers VA

1998 – 2003

industry Psychogenics

thesis

 
Bioinformatics Consulting

Raymond Auerbach

papers RKA

9/2007 – 08/31/2012

CBB (jt. w. M Snyder)

industry --

thesis defense

 
Postdoc

Jason Bedford

papers JAS

07/2013 – 04/2015

CBB (NSF fellow)

-- --

Paul Bertone

papers PB

1998 – 2005

MCDB (jt. with M Snyder)

faculty EBI (Cambridge)

 
Group Leader

Jieming Chen

papers JC

6/8/2011 – 3/31/2016

CBB (jt. w. L Regan)

postdoc UCSF

thesis defense

 
Postdoc, UCSF

Rajdeep Das

papers RD

1998 – 2004

Chemistry

postdoc CSHL

thesis

 
Post-Doc, CSHL; then Law Student

Jiang Du

papers JDU

9/2004 – 2/2010

CS (jt. w. D McDermott)

industry JP Morgan

thesis defense

 
Quant. Analyst

Samuel Flores

papers SF

9/2004 – 7/30/2007

Physics

faculty Cell & Mol. Biol., Uppsala U

thesis defense

 
Asst. Prof.

Yao Fu

papers YF

07/2011 – 7/31/2015

CBB

-- Bina Technologies

 
Bioinformatics Scientist

Tara Gianoulis

papers TG

9/2003 – 8/2009

CBB (jt. w. M Snyder)

postdoc Harvard

thesis

 
Post-Doc, Church Lab, Harvard Med DECEASED

Dov Greenbaum

papers DG

1999 – 2004

Genetics

adv degree Yale University

thesis defense

 
Asst. Prof. (Adjunct)

Ronald Jansen

papers RJ

1997 – 2002

MB&B

industry Goldman Sachs

 
Managing Director

Ted Johnson

papers TJ

1996 – 2003

MB&B

-- --

Werner Krebs

papers WK

1996 – 2001

industry Bank of America

thesis

Hugo (Yu Kor) Lam

papers YHL

9/2005 – 6/2010

CBB

industry 23andme

thesis defense

 
programmer

Jing (Jane) Leng

papers JJL

7/2009 – 7/2014

CBB (jt. w. J Noonan)

-- illumina

 
Bioinformatics Scientist

Xinmeng (Jasmine) Mu

papers XJM

9/2007 – 12/31/2012

CBB

postdoc Broad Institute of Harvard & MIT

defense

 
Computational Biologist

Prianka Patel

papers PP

9/2004 – 5/31/2010

MB&B (jt. w. D Engelman)

adv degree --

defense

Rebecca Robilotto

papers RR

9/2007 – 9/2012

CBB

-- --

Thomas Royce

papers TR

5/2002 – 9/25/2007

CBB

industry Illumina

thesis

 
Scientist, Illumina Inc, 9885 Towne Centre Drive, San Diego, CA 92121-1975

Michael Seringhaus

papers MS

9/2001 – 9/4/2007

adv degree Alaska Supreme Court

thesis

 
Law Clerk to Justice Craig F. Stowers

Chong Shou

papers CS

9/2005 – 7/2011

CBB (jt. w. M Snyder)

industry MF Global

thesis defense

 
Senior Risk Analyst

Andrew Smith

papers AS

9/2002 – 8/14/2007

CS

industry Bristol-Myers Squibb

thesis defense

 
Bioinformatics Developer, Bristol-Myers Squibb 311 Pennington-Rocky Hill Road Pennington, NJ

Kevin (Yuk-Lap) Yip

papers KY

9/2004 – 05/26/2009

CS (jt. w. D McDermott)

faculty The Chinese University of Hong Kong

thesis defense

 
Asst. Prof.

Haiyuan Yu

papers HY

2000 – 2005

MB&B

faculty Biostat & Comp. Bio., Cornell U

defense

 
Asst. Prof.

Gili Zilberman

papers GZ

8/2011 – 2012

CBB

-- --

 
Withdrew

Yuen-Jong

papers YJL

8/2004 – 6/2009

-- Harvard Medical School

 
Surgery Resident
 

Past Undergrad Students

Ben Au

papers --

05/2009 – 08/2009

Mentored by: AAN

-- --

Russell Ault

papers --

06/2013 – 05/2014

Mentored by: ars+SB

adv degree Ohio State University

 
Medical Student

Ethan Baker

papers --

5/9/2016 – 8/1/2016

Mentored by: AH

-- --

Caroline Bank

papers --

03/2013 – 08/2013

Mentored by: CSDS

-- --

Sarah Baxter

papers ugSB2

? – ?

adv degree Harvard

 
Ph.D. Student Harvard

Nina Blanson

papers --

09/2013 – ?

Mentored by: ars+JR

-- --

Yanwei Cai

papers --

7/7/2014 – 09/2014

Mentored by: KKY

-- --

 
Undergraduate Researcher

Richard Chang

papers --

5/1/2015 –

ars+STL mentor

--

thesis defense

 

Xueying Chen

papers ugXC

5/2006 – 6/2/2007

AHA Fellow

adv degree Cornell

 
Medical Student, Cornell School of Medicine

David Chen

papers ugDZC

7/2009 – ?

(STARS student)

industry Microsoft

 
Programmer

Julien Clancy

papers JEC

01/18/2016 – 06/01/2016

ars+RK mentor: full-time postgrad

-- --

Aohan Dang

papers --

5/26/15 – ?

Mentored by: ars+SK

-- --

Keri Dorko

papers ugKD

2005 – 2005

-- --

Shawn Douglas

papers ugSD

2002 – 2004

adv degree Harvard

 
PhD Student, Genetics Dept., Harvard Med, Boston, MA

Amar Drawid

papers ugAD

1999 – 2000

industry Sanofi-Aventis

thesis

 
Sanofi-Aventis Pharmaceuticals, New Jersy

Nathaniel Echols

papers ugNE

2000 – 2003

adv degree UC Berkeley

 
Ph.D Student, UC Berkeley

Elizaveta Frienkman

papers ugEF

9/2003 – 2005

-- --

Theodore Gibson

papers ugTHG

6/9/2008 – 9/1/2009

-- --

Ian Gonzalez

papers --

01/2014 – ?

Mentored by: ars+RK

-- --

 
Undergraduate Researcher

Aditya Gudibanda

papers --

01/2016 – ?

Mentored by: ars+JZ

-- --

Luke Hansen

papers --

10/2013 – ?

Mentored by: ars+RK

-- --

 
Undergraduate Researcher

Rahim Hashim

papers --

09/2013 – 04/2014

Mentored by: ars+JC

-- --

Jacob Hoops

papers --

9/2016 – ?

Mentored by: ars+FN

-- --

Tiffany Hsu

papers --

10/2013 – ?

Mentored by: ars+RK

-- --

 
Undergraduate Researcher

Philip Hu

papers --

02/2009 – 08/2009

Mentored by: KKY

-- --

Justin Jee

papers ugJJ2

1/2007 – 8/31/2010

Mentored by: JR

-- --

Mike Jin

papers ugMJ

9/2010 – 4/2013

Mentored by: SB

industry Microsoft Dynamics

Gregory Jordan

papers ugGJ

8/2005 – 2007

adv degree Cambridge U

Jae Kim

papers --

7/1/2014 – 8/21/2014

Mentored by: ars+ANS

-- --

 
Undergraduate Researcher

Daniel Kim

papers --

01/2013 – ?

Mentored by: ars+JR

-- --

Stephen Kiss

papers uSK

9/2004 – 3/2006

-- --

Jayanth Krishnan

papers JK

06/2014 – ?

Mentored by: ars+JZ [full-time postgrad]

-- --

Hannah Lawrence

papers --

6/2016 – ?

Mentored by: ars+KKY

-- --

Cheryl Leung

papers ugCL

5/2007 – ?

-- --

Tianxiao Li

papers --

06/2016 – 09/2016

Mentored by: MTG

-- --

Jimmy Lin

papers ugJL2

1999 – 2000

adv degree Johns Hopkins

 
MD/PhD Student, John Hopkins University, Baltimore, MD

Zhu Liu

papers --

07/2013 – 09/2013

Mentored by: EK,JC,YF

-- --

 
Undergraduate Researcher

Jeremy Liu

papers --

03/2013 – ?

Mentored by: ars+KKY

-- --

 
Undergraduate Researcher

Charlie Liu

papers ugCL2

9/2006 – ?

Casual

-- --

David Lu

papers ugDL

2003 – 2005

-- --

Patrick McGarvey

papers ugPM

2000 – 2001

-- --

David McPeek

papers --

3/11/2015 – 8/11/2015

Mentored by: ars+RK

-- --

Wedzerai Munyengwa

papers ugWM

5/2007 – ?

STARS

-- --

Daniel Newburger

papers ugDN

4/2005 – ?

-- --

Khang Nguyen

papers ugKN

9/2004 – 12/2006

-- --

Eric Pan

papers --

05/2013 – ?

Mentored by: ars+DW

-- --

Sharon Qian

papers --

10/2013 – 05/2013

Mentored by: ars+WC

-- --

 
Undergraduate Researcher

Calvin Rhodes

papers --

Sep-16 – ?

Mentored by: ars+DS

-- --

Alexander Rivas

papers ugAR

2005 – 2005

-- --

Girish Sastry

papers --

05/2009 – 08/2009

Mentored by: AAN (STARS student)

-- --

Falk Schubert

papers ugFS

2003 – 2005

-- --

Michael Schwartz

papers ugMS2

2005 – 2005

Mentored by:

-- --

Kevin Shen

papers --

? – ?

Mentored by: AAN

-- --

Max Skibber

papers --

07/2013 – 08/2013

Mentored by: JR

-- --

Nebyou Soloman

papers ugNS

5/2006 – 9/2006

STARS

-- --

Peter Starr

papers ugPS

8/2006 – 7/2007

Casual

adv degree --

 
MD/PhD student

Brad Stenger

papers ugBS

2005 – 2006

adv degree Georgia Tech

 
Student, Georgia Tech

Aarlo Stone-Fish

papers ugASF

9/2005 – 4/2006

-- --

George Wang

papers --

06/2016 – ?

Mentored by: ars+SK

-- --

Cyrus Wilson

papers ugCW

1998 – 2000

adv degree Stanford

 
Ph.D student, Standford

Phil Xie

papers --

6/10/2014 – 8/21/2014

Mentored by: ars+ANS

-- --

 
Undergraduate Researcher

Sherwin Yu

papers ugSY

6/2009 – ?

Mentored by: NB

-- --

Selcen Yuksel

papers --

10/2015 – 11/2015

Mentored by:ars+ANS

--

thesis defense

 

Andrew Zhang

papers --

5/9/2014 – 6/13/2014

Mentored by: ars+YZ

-- --

 
Undergraduate Researcher

Scott Zhu

papers ugSZ

2003 – 2005

CBB

-- --