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Bioinformatics Section
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17 |
MG |
Bioinformatics: Overview |
- Definition of bioinformatics,
- examples of data,informatics techniques, and applications
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19 |
MG |
Overview Continued |
- Boundaries of bioinformatics
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24 |
MG |
Analysis of Sequences I |
- Dynamic programming,
- pair wise sequence alignment,
- substitution matrices,
- multiple sequence alignment,
- profiles, motifs, hidden Markov models,
- p-values in relation to scoring alignments,
- extreme value distributions
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26 |
MG |
Analysis of Sequences II |
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31 |
MG |
Analysis of Sequences III |
| Nov |
02 |
MG |
Demonstration of Web Resources |
- Semantic Web
- Data Heterogeneity
- XML, RDF, and LSIDs
- Examples of semantic web applications
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07 |
MG |
Analysis of Sequences IV |
- Computational Complexity
- ROC Plots
- Heuristic approaches to sequence alignment, FastA, Blast, and improvements
- Problems that arise when using a database
- Secondary structure, simplified picture with TM helices
- GOR
- Threading/Fold recognition
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09 |
MG |
Structures I |
- Protein geometry and structure
- Comparison of 2 structures
- Differences between sequence and structure alignment techniques
- Dynamic programming difficulties
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16 |
MG |
Structures II |
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28 |
MG |
Structures III |
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30 |
MG |
Simulation |
- Main forces with concerns to macromolecules
- Major simulation methods
- Major approximations used with macromolecules
- Details about minimizaiton
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